Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs4794136
rs4794136
0.010 GeneticVariation BEFREE The variation c.1569C>T (XYLT-II) occurs with a significantly higher frequency in younger OA patients in comparison with the older ones (P<0.001) and the controls (P<0.02). 16376579

2006

dbSNP: rs777761378
rs777761378
0.010 GeneticVariation BEFREE The variation c.1569C>T (XYLT-II) occurs with a significantly higher frequency in younger OA patients in comparison with the older ones (P<0.001) and the controls (P<0.02). 16376579

2006

dbSNP: rs2908004
rs2908004
0.010 GeneticVariation BEFREE In conclusion, two SNPs (rs2908004 and rs1799986) are associated with the decreased risk of OA by regulating the Wnt pathway. 31560818

2019

dbSNP: rs731236
rs731236
VDR
0.010 GeneticVariation BEFREE The rs731236 polymorphism is associated with the risk of primary OA of the knee in Mexican Mestizo population. 30657057

2018

dbSNP: rs2248393
rs2248393
C 0.700 GeneticVariation GWASCAT Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data. 30664745

2019

dbSNP: rs2626053
rs2626053
0.700 GeneticVariation GWASDB Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study. 22763110

2012

dbSNP: rs41310883
rs41310883
0.010 GeneticVariation BEFREE A nonsynonymous single nucleotide variant rs41310883 (c.524C>T, p.Thr175Met) in TUFT1 gene was found to co-segregate perfectly with MTP I OA. 28410428

2017

dbSNP: rs1149620
rs1149620
T 0.700 GeneticVariation GWASCAT Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data. 30664745

2019

dbSNP: rs1061622
rs1061622
0.010 GeneticVariation BEFREE Tumor necrosis factor receptor 2 M196R polymorphism in rheumatoid arthritis and osteoarthritis: relationship with sTNFR2 levels and clinical features. 16871413

2006

dbSNP: rs1564861
rs1564861
0.010 GeneticVariation BEFREE In the genetic model analysis, we found that rs1905786, rs1032128, rs3134058, rs11573828, rs11573849, rs3134056, and rs1564861 were associated with an increased or decreased risk of knee OA before adjusted by sex and age. 30972968

2019

dbSNP: rs1032128
rs1032128
0.010 GeneticVariation BEFREE And after adjustment, three SNPs (rs1485286, rs1905786, and rs1032128) were identified to have a negative effect on knee OA. 30972968

2019

dbSNP: rs1905786
rs1905786
0.010 GeneticVariation BEFREE And after adjustment, three SNPs (rs1485286, rs1905786, and rs1032128) were identified to have a negative effect on knee OA. 30972968

2019

dbSNP: rs1800629
rs1800629
TNF
0.030 GeneticVariation BEFREE The frequencies of the allele 'A' of rs1800629 were 16% and 8.85% in OA cases and in controls, respectively, and thus the -308A allele had a 1.9612-fold (95% CI = 1.3323-2.8869, P < 0.001) increased risk for OA as compared to the -308G allele. 23748461

2013

dbSNP: rs1800629
rs1800629
TNF
0.030 GeneticVariation BEFREE The purpose of the present case-control study was to investigate a possible association of four cytokine single nucleotide polymorphisms (SNPs), IL-4R -3223C>T (rs2057768), IL-8 -251T>A (rs4073), IL-10 -1082A>G (rs1800896) and TNF -A-308G>A (rs1800629) with OA susceptibility. 30186498

2018

dbSNP: rs1800629
rs1800629
TNF
0.030 GeneticVariation BEFREE In conclusion, TNF-α rs1800629 polymorphism confers susceptibility to OA, especially among Asians. 29846433

2018

dbSNP: rs361525
rs361525
TNF
0.010 GeneticVariation BEFREE However, no significant differences were found in the genotype and allele frequencies for rs361525 between OA and HC groups. 23748461

2013

dbSNP: rs10502437
rs10502437
G 0.700 GeneticVariation GWASCAT Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data. 30664745

2019

dbSNP: rs352140
rs352140
0.010 GeneticVariation BEFREE T-1486C was significantly associated with OA in both populations with G1635A of TLR-9 gene was found to be significantly associated with OA when the two populations were combined. 21748790

2012

dbSNP: rs715572
rs715572
0.020 GeneticVariation BEFREE TIMP3 rs715572G/A is a candidate protective gene for severe knee OA.</span> 26068512

2015

dbSNP: rs715572
rs715572
0.020 GeneticVariation BEFREE The minor G allele of rs650108 was associated with OA risk in a recessive model (<i>p</i> = 0.034, OR = 1.82, 95%CI = 1.04-3.18), while the minor A allele of rs715572 was associated with OA risk in a recessive model (<i>p =</i> 0.030, OR = 1.88, 95%CI = 1.05-3.34). 29137364

2017

dbSNP: rs75621460
rs75621460
A 0.700 GeneticVariation GWASCAT Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data. 30664745

2019

dbSNP: rs1800470
rs1800470
0.020 GeneticVariation BEFREE We have shown that a T(869)-->C polymorphism of the transforming growth factor-beta1 (TGF-beta1) gene, which results in a Leu-->Pro substitution at amino acid 10, is associated with bone mineral density in Japanese adolescents and postmenopausal women, with genetic susceptibility to osteoporosis or spinal osteoarthritis, and with the outcome of treatment for osteoporosis with active vitamin D. I here review our recent studies, which have provided insight into the function of TGF-beta1 as well as into the role of genetic factors in the development of osteoporosis and osteoarthritis. 10996011

2000

dbSNP: rs1800470
rs1800470
0.020 GeneticVariation BEFREE Association of TGFB1 29C/T and IL6 -572G/C polymorphisms with developmental hip dysplasia: a case-control study in adults with severe osteoarthritis. 25603974

2015

dbSNP: rs1982073
rs1982073
0.010 GeneticVariation BEFREE Ethnicity and genotyping method-stratified analysis under both models implied that the rs1982073 C>T polymorphism was positively correlated with the risk of fracture, OP, and OA among Asians under detection via the non-PCR-RFLP method. 25501632

2016

dbSNP: rs3771501
rs3771501
G 0.700 GeneticVariation GWASCAT Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data. 30664745

2019